BioMatriX

Wednesday, February 16, 2011

BioMatriX is a dynamic, interactive, multi-functional and user friendly Bioinformatics Kit. It is a composite of several modules providing Sequence Analysis (DNA and Protein), Structure Visualization and Superimposition, Linkage Analysis with genetic markers and lots more to explore.

This product is beneficial to a scientist in order to boost up research and analysis which is a time efficient and effective task to do. BioMatriX is developed in the form of a kit while keeping in mind all important analysis needed by a bioinformatician to be done in one research at a time and made them available at one platform. 

Main Interface

Please post your valuable comments for improvement and enhancement in product.

Posted by Posted by BioMatriX at 11:10 PM
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Sunday, February 13, 2011

                                               

your valuable comments and suggestions are welcomed here. Please type message or comment. Thanks!

Posted by Posted by BioMatriX at 1:51 AM
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Click here to download Demo Version

Click here to download Tutorial



Note: This software is free for Academic Use. Anyone can download and use it for research.

Posted by Posted by BioMatriX at 12:54 AM
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Modules & Features:


BioMatriX is a comprehensive Bioinformatics Tool Kit composite of following modules and features:

DNA/RNA Sequence Analysis

 Calculates DNA Nucleotide Composition

Finds DNA Complement

Finds DNA Reverse Complement

Transcribes RNA

Find RNA Complement

Find RNA Reverse Complement

Translates Protein

 Finds ORFs (Open Reading Frames)

 Perform Alternate Translation

                         

 Graphical Representations: 

Nucleotide Composition Plot

Nucleotide Concentration Plot

Molecular Weight Plot

Sequence Editing: 

Sequence Search

Sequence Insertion

Sequence Mutation

Sequence Deletion

     

Sequence Alignment:

Dot Plot

Pairwise Sequence Alignment

Multiple sequence Alignment

Protein Sequence Analysis

Calculates Amino acids composition

Converts Amino acids to Nucleotide sequence

Calculates Molecular Weight

Calculates Charge Density PI

Determines nature of protein

Graphical Representations:

Protein Polarity Plot

Molecular Weight Plot

Protein Flexibility Plot

Amino acid Concentration Plot

Protein Accessibility Plot

Protein Antigenic Plot

Exposed Plot

Turn Plot

Hydrophilicity Plot

Hydrophobicity Plot (Scales: Engleman-Steitz, Hopp-Woods, Kyte-Doolittle, Janin, Chothia &  Eisenberg-Weiss)

Sequence Editing: 

Sequence Search

Sequence Insertion

Sequence Mutation

Sequence Deletion

Sequence Alignment:

Dot Plot

Pairwise Sequence Alignment

Multiple sequence Alignment

Phylogenetics Analysis

Alignment Tree

UPGMA Tree

NJ Tree

Protein Structure Analysis   

Extracts PDB Information

Mutates a Residue in Structure

BIOMOL Visualizer (for Structure Manipulations and Visualization   

          purposes)

Structure Superimposition

Linkage Analysis

Single Point Locus Calculations:

Create Pedigree File

Find Recombinants

Find Non-recombinants

Calculate LOD Score

LOD Score Graphical Plot

Recombinant/Non-recombinant Ratio Plot

 Multi-point Locus Calculations:

Creates PRE file

Creates PED file

Creates DAT file

Calculates Multi-point LOD Score                        

Genetic Marker Database (Version 8)  

Other Tools

File Format Converter (for GenBank, EMBL, Swissprot and FASTA)

Restriction Enzyme Cutter (for Blunt end RE)

Basic tools (NotePad and Calculator)

Along with basic File Manipulation functions of Multiple File Format Reader, File Writing and Saving

                                                                          

                         MORE to Build, Mine & explore in future.....

Posted by Posted by BioMatriX at 12:42 AM
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